成人VR视频

成人VR视频.CA / Eastern Canadian Plant Phenotyping Platform / Research

Selected papers, patents and software code that have arisen from the ECP3

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List of peer-reviewed contributions co-authored by imaging core staff

Publications marked with an asterisk (*) are directly related to the development of sample preparation, imaging protocol or data analysis method by a Multi-Scale Imaging Core Facility member.

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  • Chebli, Y. and Geitmann, A., 2024. Pectate lyase-like lubricates the male gametophyte's path toward its mating partner.听Plant Physiology,听194(1), pp.124-136. .听
  • Chebli, Y. and Geitmann, A., 2023. Live Fluorescence Visualization of Cellulose and Pectin in Plant Cell Walls. In听Histochemistry of Single Molecules听(pp. 269-279). Humana, New York, NY. .
  • Dutilleul, P., Mudalige, N. and Rivest, L.P., 2022. Learning how a tree branches out: A statistical modeling approach.听PloS one,听17(9), p.e0274168. doi.org/10.1371/journal.pone.0274168.听听.
  • Chebli Y, Bidhendi AJ, Kapoor K, Geitmann A. 2021.听Cytoskeletal regulation of primary plant cell wall assembly. Current Biology听31(10): R681-R695. DOI:听10.1016/j.cub.2021.03.092.听.
  • Bidhendi AJ, Chebli Y, Geitmann A. 2020. Fluorescence visualization of cellulose and pectin in the primary plant cell wall. Journal of Microscopy 278(3):164-81. DOI: 10.1111/jmi.12895. .
  • Bertrand-Rakusov谩 H, Chebli Y, Geitmann A. 2020. Silicone chambers for pollen tube imaging in microstructured in vitro environments. In: Geitmann A, editor. Pollen and Pollen Tube Biology: Methods and Protocols. New York, NY: Springer US; 2020. p. 211-21. DOI: 10.1007/978-1-0716-0672-8_15. .
  • Han L, Srocke F, Masek O, Smith DL, Lafond JA, Allaire S, Dutilleul P. 2020. A Graphical-User-Interface application for multifractal analysis of soil and plant structures. Computers and Electronics in Agriculture 174:105454. DOI: 10.1016/j.compag.2020.105454. .
  • Kaneda M, van Oostende-Triplet C, Chebli Y, Testerink C, Bednarek SY, Geitmann A. 2019. Plant AP180 N-terminal homolog proteins are involved in clathrin-dependent endocytosis during pollen tube growth in Arabidopsis thaliana. Plant and Cell Physiology 60(6):1316-30. DOI: 10.1093/pcp/pcz036..
  • Altartouri B, Bidhendi AJ, Tani T, Suzuki J, Conrad C, Chebli Y, Liu N, Karunakaran C, Scarcelli G, Geitmann A. 2019. Pectin chemistry and cellulose crystallinity govern pavement cell morphogenesis in a multi-step mechanism. Plant Physiology181(1):127-41. DOI: 10.1104/pp.19.00303.
  • Beaulieu J, Dutilleul P. 2019. Applications of computed tomography (CT) scanning technology in forest research: a timely update and review. Canadian Journal of Forest Research 49(10):1173-88. DOI: 10.1139/cjfr-2018-0537. .
  • Chebli Y, Geitmann A. 2018. FRAP experiments show pectate lyases promote pollen germination and lubricate the path of the pollen tube in Arabidopsis thaliana. Microscopy and Microanalysis 24(S1):1376-7. DOI: 10.1017/S1431927618007365. .

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List of contributions that used an infrastructure of the Facility
Publications that acknowledge the Facility are marked with an asterisk (see section D for more details).

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Peer reviewed Papers

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  • Wang, Q., Liu, J., Luo, Y., Kliemke, V., Matta, G.L., Wang, J. and Liu, Q., 2024. The nanoscale organization of the Nipah virus fusion protein informs new membrane fusion mechanisms.听bioRxiv, pp.2024-02. .
  • Sahyoun, A.M., Min, M.W., Xu, K., George, S. and Karboune, S., 2024. Characterization of levans produced by levansucrases from Bacillus amyloliquefaciens and Gluconobacter oxydans: Structural, techno-functional, and anti-inflammatory properties.听Carbohydrate Polymers,听323, p.121332..
  • Bidhendi, A.J., Lampron, O., Gosselin, F.P. and Geitmann, A., 2023. Cell geometry regulates tissue fracture.听Nature Communications,听14(1), p.8275.听.
  • Sharma, M. and Jabaji, S., 2023. Transcriptional landscape of Brachypodium distachyon roots during interaction with Bacillus velezensis strain B26.听Genomics, p.110583. .
  • Bidhendi, A.J., Altartouri, B. and Geitmann, A., 2023. 3D Visualization of Microtubules in Epidermal Pavement Cells.听Methods in Molecular Biology (Clifton, NJ),听2604, pp.25-42. .
  • Kapoor, K. and Geitmann, A., 2023. Pollen tube invasive growth is promoted by callose.听Plant Reproduction, pp.1-15. .听
  • Huang, S., Zou, S. and Wang, Y., 2023. Construction of compostable packaging with antibacterial property and improved performance using sprayed coatings of modified cellulose nanocrystals.听Carbohydrate Polymers, p.120539. .
  • Sleboda, D.A., Geitmann, A. and Sharif-Naeini, R., 2023. Multiscale structural anisotropy steers plant organ actuation.听Current Biology. .
  • Mahmoud, M., Zhou, Z., Kaur, R., Bekele, W., Tinker, N.A. and Singh, J., 2022. Toward the development of Ac/Ds transposon-mediated gene tagging system for functional genomics in oat (Avena sativa L.).听Functional & Integrative Genomics,听22(4), pp.669-681. .
  • Salazar, A.V., Selvadurai, P.A., Niu, Z., Bianchi, P., Rabaiotti, C., Madonna, C., Wiemer, S. and Germanovich, L.N., 2022, June. Insights into Triaxial Testing Using Coupled Acoustic Emission and Distributed Optical Fiber Strain Measurements. In听56th US Rock Mechanics/Geomechanics Symposium. OnePetro. .听
  • Mahmoud, M., Zhou, Z., Kaur, R., Bekele, W., Tinker, N.A. and Singh, J., 2022. Toward the development of Ac/Ds transposon-mediated gene tagging system for functional genomics in oat (Avena sativa L.).听Functional & Integrative Genomics,听22(4), pp.669-681.听.听
  • Wang, L., Huang, S. and Wang, Y., 2022. Recycling of Waste Cotton Textile Containing Elastane Fibers through Dissolution and Regeneration.听Membranes,听12(4), p.355. .
  • Xu, K., Bechu, A., Basu, N., Ghoshal, S., Moores, A. and George, S., 2022. Hazard Profiling of Commercially Relevant Quantum Dot Components Revealed Synergistic Interactions between Heavy Metals and Polymers.听Chemical Research in Toxicology. .
  • Huang, K., Maltais, A., Liu, J. and Wang, Y., 2022. Wood cellulose films regenerated from NaOH/urea aqueous solution and treated by hot pressing for food packaging application.听Food Bioscience,听50, p.102177. .听
  • Sobat, E. and Whalen, J.K., 2022. Mycorrhizal colonization associated with roots of field鈥恎rown maize does not decline with increasing plant鈥恆vailable phosphorus.听Soil Use and Management. .
  • Tanney, C.A., Backer, R., Geitmann, A. and Smith, D.L., 2021. Cannabis glandular trichomes: a cellular metabolite factory.听Frontiers in Plant Science, p.1923. .
  • Ashraf, S., Agyapong, J., Rohrbach, P. and Hasan, T., 2021. OPD (Online Plasmodium Diagnosis): An ALA-PpIX based functional assay to predict active malaria.听Photodiagnosis and Photodynamic Therapy,听36, p.102510. .听
  • Xu, K., Basu, N. and George, S., 2021. Dietary nanoparticles compromise epithelial integrity and enhance translocation and antigenicity of milk proteins: An in vitro investigation.听NanoImpact,听24, p.100369. .听
  • Mathew, R., Wunderlich, J., Thivierge, K., Cwiklinski, K., Dumont, C., Tilley, L., Rohrbach, P. and Dalton, J.P., 2021. Biochemical and cellular characterisation of the Plasmodium falciparum M1 alanyl aminopeptidase (PfM1AAP) and M17 leucyl aminopeptidase (PfM17LAP).听Scientific reports,听11(1), pp.1-17. .
  • Sharma听M, Dina S, Charron J-B, and Suha J. 2020. A Crosstalk Between Brachypodium Root Exudates, Organic Acids, and Bacillus velezensis B26, a Growth Promoting Bacterium.听Frontiers in Microbiology 11:575578. DOI: 10.3389/fmicb.2020.575578.听.
  • Tripathi听R听K,听Overbeek听W, Singh听J. 2020.听Global analysis of听SBP听gene family in听Brachypodium听distachyon听reveals its association with spike development.听Scientific Reports听10(1):15302.听DOI:听10.1038/s41598-020-72005-7.听.
  • Li M, Karboune S, Liu L, Light K, L'Hocine L, Achouri A, Pitre M, Mateo C. 2020.听Combining phenolic grafting and laccase-catalyzed cross-linking: Effects on structures, technofunctional properties and human immunoglobulin E binding capacity of egg white proteins. Food Chemistry 355:129587. DOI:听10.1016/j.foodchem.2021.129587.听.
  • Saad M, Chinerman D, Tabrizian M, Faucher SP. 2020. Identification of two aptamers binding to Legionella pneumophila with high affinity and specificity. Nature Scientific Reports 10(1):9145. DOI: 10.1038/s41598-020-65973-3..
  • Bidhendi AJ, Zamil MS, Geitmann A. 2020. Assembly of a simple scalable device for micromechanical testing of plant tissues. Methods in cell biology: Academic Press; 2020..
  • Valenzuela G, Castro LE, Valencia-Zamora J, Vera-Arias CA, Rohrbach P, S谩enz FE. 2019. Genotypes and phenotypes of resistance in Ecuadorian Plasmodium falciparum. Malaria Journal 18(1):415. DOI: 10.1186/s12936-019-3044-z. .
  • Saleh D, Jarry J, Rani M, Aliferis KA, Seguin P, Jabaji SH. 2019. Diversity, distribution and multi-functional attributes of bacterial communities associated with the rhizosphere and endosphere of timothy (Phleum pratense L.). Journal of Applied Microbiology127(3):794-811. DOI: 10.1111/jam.14334. .
  • Reiling SJ, Rohrbach P. 2019. Uptake of a fluorescently tagged chloroquine analogue is reduced in CQ-resistant compared to CQ-sensitive Plasmodium falciparum parasites. Malaria Journal 18(1):342. DOI: 10.1186/s12936-019-2980-y..
  • Bidhendi AJ, Li H, Geitmann A. 2019. Modeling the nonlinear elastic behavior of plant epidermis. Botany 98(1):49-64. DOI: 10.1139/cjb-2019-0058. .
  • Bidhendi AJ, Altartouri B, Gosselin FP, Geitmann A. 2019. Mechanical stress initiates and sustains the morphogenesis of wavy leaf epidermal cells. Cell Reports 28(5):1237-50.e6. DOI: 10.1016/j.celrep.2019.07.006..
  • Reiling SJ, Krohne G, Friedrich O, Geary TG, Rohrbach P. 2018. Chloroquine exposure triggers distinct cellular responses in sensitive versus resistant Plasmodium falciparum parasites. Nature Scientific Reports 8(1):11137. DOI: 10.1038/s41598-018-29422-6. .

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Patent

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  • Canada and US patent application no US 16/850,355 鈥� Saad M, Chinerman D, Tabrizian M, Faucher SP. Identification of two aptamers binding to Legionella pneumophila with high affinity and specificity.

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Software Code

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  • Han L, Srocke F, Masek O, Smith DL, Lafond JA, Allaire S, Dutilleul P. 2020. A Graphical-User-Interface application for multifractal analysis of soil and plant structures. Computers and Electronics in Agriculture. 174:105454. DOI: 10.1016/j.compag.2020.105454..

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